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Pull requests: nf-core/modules

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Pull requests list

Update strict syntax in pigz-compress module
#9952 opened Feb 9, 2026 by yz533cb Loading…
17 tasks
Update pretext to topic
#9950 opened Feb 9, 2026 by DLBPointon Loading…
1
Telescope
#9948 opened Feb 9, 2026 by hanalysis Loading…
9 tasks done
1
6
Change output directory and file names for bwa index
#9947 opened Feb 9, 2026 by pmoris Loading…
11 of 17 tasks
3
fix(seqkit/grep): respect input compression format
#9945 opened Feb 9, 2026 by prototaxites Loading…
2 of 17 tasks
Route uncompressed single-run FASTQs through CAT_FASTQ size/xs
#9933 opened Feb 9, 2026 by pinin4fjords Loading…
2 tasks
Fix modules linting errors
#9930 opened Feb 8, 2026 by LouisLeNezet Loading…
17 tasks
@LouisLeNezet
Paraphase zips output vcf/vcf-index files only when these are created
#9929 opened Feb 8, 2026 by bagnacan Loading…
3 tasks done
Strict syntax for modules starting with [w-z] size/m size/s
#9927 opened Feb 7, 2026 by muffato • Draft
17 tasks
@muffato
Updating Parabricks rnafq2bam module for compatibility with the rnaseq pipeline
#9925 opened Feb 6, 2026 by gburnett-nvidia Loading…
17 tasks
1
3
Update XZ to topics
#9924 opened Feb 6, 2026 by Joon-Klaps Loading…
17 tasks
Fix incompatible Docker Daemon Version in Devcontainer (for modules)
#9921 opened Feb 6, 2026 by JulianFlesch • Draft
17 tasks
1
ci: add Graphite CI Optimizer size/s
#9911 opened Feb 5, 2026 by edmundmiller Loading…
@edmundmiller
2
Update bcl_demultiplex size/m
#9883 opened Feb 4, 2026 by matthdsm Loading…
17 tasks
Add rgi/bwt
#9873 opened Feb 3, 2026 by vinisalazar Loading…
17 tasks done
7
Add fastqscreen aligner option
#9854 opened Feb 3, 2026 by pmoris Loading…
5 of 17 tasks
2
Fix meta_fb never defined in CELLRANGER_MULTI (#9798)
#9803 opened Jan 29, 2026 by SZhengP • Draft
4 of 17 tasks
1
5
update module: PERBASE Ready for Review
#9795 opened Jan 28, 2026 by camlloyd Loading…
3 of 17 tasks
1
5
Update CELLPOSE module to version 4.0.7 and adjust test configurations
#9793 opened Jan 28, 2026 by FloWuenne Loading…
6
Fix file extension for module PBMARKDUP
#9784 opened Jan 27, 2026 by sainsachiko Loading…
3 of 17 tasks
10
Swap bwa/mem to topic and combine output channels size/l
#9783 opened Jan 27, 2026 by SPPearce Loading…
1
Add module stainwarpy/transformsegmask draft
#9778 opened Jan 26, 2026 by tckumarasekara Loading…
12 of 17 tasks
1
Add new module stainwarpy/register draft
#9777 opened Jan 26, 2026 by tckumarasekara Loading…
12 of 17 tasks
1
Add nextflow lint
#9726 opened Jan 21, 2026 by maxulysse Loading…
17 tasks
4
feat(yallhap/classify): Add new module for Y-chromosome haplogroup classification
#9704 opened Jan 20, 2026 by trianglegrrl • Draft
4 tasks done
5
ProTip! What’s not been updated in a month: updated:<2026-01-09.